MembraneModel.g4

Generated from the MembraneModel.g4 antlr grammar file, using RRD for ANTLR4.

model

 line

line

 initialTreeDefinition speciesDefinition parameterDefinition reactionDefinition locationContextBlock NEWLINE

initialTreeDefinition

 'initial tree' NEWLINE '{' tags IDENTIFIER initialMembraneDefinition '}' NEWLINE

initialMembraneDefinition

 NEWLINE '{' INTEGER tags IDENTIFIER initialMembraneDefinition '}' NEWLINE

speciesDefinition

 'species' IDENTIFIER LOCATION IDENTIFIER '=' equation units tags

parameterDefinition

 'parameter' IDENTIFIER '=' equation units

locationContextBlock

 locationContextBlockStart '{' speciesDefinition parameterDefinition reactionDefinition NEWLINE '}'

locationContextBlockStart

 LOCATION IDENTIFIER

tags

 '[' tag ']'

tag

 IDENTIFIER IDENTIFIER_QUOTED

reactionDefinition

 'reaction' combinedSpecies 'modifier' equation 'delay' equation arrow combinedSpecies 'modifier' equation 'delay' equation 'decay'

arrow

 ARROW

units

 unit '.' unit

unit

 IDENTIFIER '^' '-' INTEGER

combinedSpecies

 stoichiometrySpecies COMBINER stoichiometrySpecies

stoichiometrySpecies

 stoichiometry locatedSpecies

locatedSpecies

 IDENTIFIER LOCATION IDENTIFIER

equation

 'round' '(' equation ')' 'ln' '(' equation ')' '(' equation ')' '-' equation equation '*' '/' equation equation '+' '-' equation FLOAT INTEGER IDENTIFIER locatedSpecies

stoichiometry

 'gene' 'catalyst' INTEGER

LOCATION

 'on' 'under' 'contained' 'around'

COMBINER

 'binds' 'and'

ARROW

 '<=>' '=>'

FLOAT

 INTEGER EXPONENT DECIMAL EXPONENT

INTEGER

 DIGIT

DECIMAL

 DIGIT '.' DIGIT

EXPONENT

 'e' 'E' '+' '-' DIGIT

IDENTIFIER_QUOTED

 ''' LETTER DIGIT LETTER DIGIT '-' '_' ' ' LETTER DIGIT '-' '_' '''

IDENTIFIER

 LETTER DIGIT LETTER DIGIT '-' '_'

DIGIT

 '0' .. '9'

LETTER

 'a' .. 'z' 'A' .. 'Z'

COMMENT

 '#' not '\r' '\n'

WHITESPACE

 ' ' '\t'

NEWLINE

 '\r' '\n'